J3_5MGP_006

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5MGP|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MGP_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1471

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5MGP|1|A|C|1306
5MGP|1|A|A|1307
5MGP|1|A|A|1308
5MGP|1|A|G|1309
*
5MGP|1|A|C|1605
5MGP|1|A|C|1606
5MGP|1|A|C|1607
5MGP|1|A|A|1608
5MGP|1|A|A|1609
5MGP|1|A|A|1610
5MGP|1|A|C|1611
*
5MGP|1|A|G|1620
5MGP|1|A|U|1621
5MGP|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34