J3_5MLC_006

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAA*UAG*CUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MLC_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1259

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5MLC|1|A|C|1319
5MLC|1|A|G|1320
5MLC|1|A|A|1321
5MLC|1|A|A|1322
5MLC|1|A|A|1323
5MLC|1|A|A|1324
*
5MLC|1|A|U|1661
5MLC|1|A|A|1662
5MLC|1|A|G|1663
*
5MLC|1|A|C|1675
5MLC|1|A|U|1676
5MLC|1|A|A|1677
5MLC|1|A|G|1678

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain 7

PSRP5alpha, chloroplastic