J3_5MLC_007
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAAG*CCGAAAC*GUA
- Length
- 14 nucleotides
- Bulged bases
- 5MLC|1|A|G|1643, 5MLC|1|A|A|1645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MLC_007 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.3098
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5MLC|1|A|U|1327
5MLC|1|A|A|1328
5MLC|1|A|A|1329
5MLC|1|A|G|1330
*
5MLC|1|A|C|1641
5MLC|1|A|C|1642
5MLC|1|A|G|1643
5MLC|1|A|A|1644
5MLC|1|A|A|1645
5MLC|1|A|A|1646
5MLC|1|A|C|1647
*
5MLC|1|A|G|1656
5MLC|1|A|U|1657
5MLC|1|A|A|1658
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 4
- 50S ribosomal protein L34, chloroplastic
- Chain 7
- PSRP5alpha, chloroplastic
Coloring options: