J3_5MLC_010
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUC*GAG*CAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 5MLC|1|A|G|2351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MLC_010 not in the Motif Atlas
- Geometric match to J3_5J7L_045
- Geometric discrepancy: 0.1653
- The information below is about J3_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MLC|1|A|C|2312
5MLC|1|A|U|2313
5MLC|1|A|C|2314
*
5MLC|1|A|G|2338
5MLC|1|A|A|2339
5MLC|1|A|G|2340
*
5MLC|1|A|C|2349
5MLC|1|A|A|2350
5MLC|1|A|G|2351
5MLC|1|A|A|2352
5MLC|1|A|A|2353
5MLC|1|A|G|2354
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 50S ribosomal protein L5, chloroplastic
- Chain Q
- 50S ribosomal protein L18, chloroplastic
- Chain X
- 50S ribosomal protein L27, chloroplastic
Coloring options: