J3_5MLC_016

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAG*CGAUAGCGAAGUAGUAC*GGAAGG

Length

27 nucleotides

Bulged bases

5MLC|1|A|A|33, 5MLC|1|A|U|460, 5MLC|1|A|U|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MLC_016 not in the Motif Atlas

Homologous match to J3_4WF9_012

Geometric discrepancy: 0.1518

The information below is about J3_4WF9_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

5MLC|1|A|C|31
5MLC|1|A|U|32
5MLC|1|A|A|33
5MLC|1|A|G|34
*
5MLC|1|A|C|457
5MLC|1|A|G|458
5MLC|1|A|A|459
5MLC|1|A|U|460
5MLC|1|A|A|461
5MLC|1|A|G|462
5MLC|1|A|C|463
5MLC|1|A|G|464
5MLC|1|A|A|465
5MLC|1|A|A|466
5MLC|1|A|G|467
5MLC|1|A|U|468
5MLC|1|A|A|469
5MLC|1|A|G|470
5MLC|1|A|U|471
5MLC|1|A|A|472
5MLC|1|A|C|473
*
5MLC|1|A|G|480
5MLC|1|A|G|481
5MLC|1|A|A|482
5MLC|1|A|A|483
5MLC|1|A|G|484
5MLC|1|A|G|485

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain F

50S ribosomal protein L4, chloroplastic

Chain S

50S ribosomal protein L20, chloroplastic

Chain W

50S ribosomal protein L24, chloroplastic