J3_5MMI_006

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MMI_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1037

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5MMI|1|A|G|1083
5MMI|1|A|G|1084
5MMI|1|A|A|1085
*
5MMI|1|A|U|1109
5MMI|1|A|U|1110
5MMI|1|A|G|1111
5MMI|1|A|A|1112
5MMI|1|A|A|1113
5MMI|1|A|A|1114
5MMI|1|A|G|1115
*
5MMI|1|A|C|1130
5MMI|1|A|A|1131
5MMI|1|A|C|1132

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36, chloroplastic

Chain I

plastid ribosomal protein uL10c

Chain J

50S ribosomal protein L11, chloroplastic