J3_5MMI_008
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAG*CCGAAAC*GUAG
- Length
- 16 nucleotides
- Bulged bases
- 5MMI|1|A|G|1643, 5MMI|1|A|A|1645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MMI_008 not in the Motif Atlas
- Homologous match to J3_4WF9_005
- Geometric discrepancy: 0.2977
- The information below is about J3_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68164.1
- Basepair signature
- cWW-tSH-F-F-tHW-F-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5MMI|1|A|C|1326
5MMI|1|A|U|1327
5MMI|1|A|A|1328
5MMI|1|A|A|1329
5MMI|1|A|G|1330
*
5MMI|1|A|C|1641
5MMI|1|A|C|1642
5MMI|1|A|G|1643
5MMI|1|A|A|1644
5MMI|1|A|A|1645
5MMI|1|A|A|1646
5MMI|1|A|C|1647
*
5MMI|1|A|G|1656
5MMI|1|A|U|1657
5MMI|1|A|A|1658
5MMI|1|A|G|1659
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L34, chloroplastic
- Chain 6
- plastid ribosomal protein cL37, PSRP5
Coloring options: