J3_5MMI_009
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCAGGGC*GACAA*UA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MMI_009 not in the Motif Atlas
- Homologous match to J3_7RQB_009
- Geometric discrepancy: 0.1252
- The information below is about J3_7RQB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04858.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5MMI|1|A|U|1365
5MMI|1|A|C|1366
5MMI|1|A|A|1367
5MMI|1|A|G|1368
5MMI|1|A|G|1369
5MMI|1|A|G|1370
5MMI|1|A|C|1371
*
5MMI|1|A|G|1402
5MMI|1|A|A|1403
5MMI|1|A|C|1404
5MMI|1|A|A|1405
5MMI|1|A|A|1406
*
5MMI|1|A|U|1423
5MMI|1|A|A|1424
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L34, chloroplastic
- Chain 6
- plastid ribosomal protein cL37, PSRP5
- Chain U
- 50S ribosomal protein L23, chloroplastic
Coloring options: