J3_5MMI_011
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUG*CUAAC*GGACAUU
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MMI_011 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.1408
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MMI|1|A|A|2104
5MMI|1|A|U|2105
5MMI|1|A|U|2106
5MMI|1|A|G|2107
*
5MMI|1|A|C|2210
5MMI|1|A|U|2211
5MMI|1|A|A|2212
5MMI|1|A|A|2213
5MMI|1|A|C|2214
*
5MMI|1|A|G|2240
5MMI|1|A|G|2241
5MMI|1|A|A|2242
5MMI|1|A|C|2243
5MMI|1|A|A|2244
5MMI|1|A|U|2245
5MMI|1|A|U|2246
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2, chloroplastic
- Chain H
- plastid ribosomal protein bL9c
- Chain Y
- plastid ribosomal protein bL28c
Coloring options: