J3_5MMI_012

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GAG*CAGAAG

Length

12 nucleotides

Bulged bases

5MMI|1|A|G|2351, 5MMI|1|A|A|2353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MMI_012 not in the Motif Atlas

Homologous match to J3_4WF9_008

Geometric discrepancy: 0.1682

The information below is about J3_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.1

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

5MMI|1|A|C|2312
5MMI|1|A|U|2313
5MMI|1|A|C|2314
*
5MMI|1|A|G|2338
5MMI|1|A|A|2339
5MMI|1|A|G|2340
*
5MMI|1|A|C|2349
5MMI|1|A|A|2350
5MMI|1|A|G|2351
5MMI|1|A|A|2352
5MMI|1|A|A|2353
5MMI|1|A|G|2354

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

plastid ribosomal protein uL5c

Chain P

plastid ribosomal protein uL18c

Chain X

plastid ribosomal protein bL27c