J3_5MMI_013
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5MMI|1|A|C|2535, 5MMI|1|A|A|2536
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MMI_013 not in the Motif Atlas
- Homologous match to J3_7RQB_012
- Geometric discrepancy: 0.1033
- The information below is about J3_7RQB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.3
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MMI|1|A|C|2534
5MMI|1|A|C|2535
5MMI|1|A|A|2536
5MMI|1|A|C|2537
*
5MMI|1|A|G|2562
5MMI|1|A|U|2563
5MMI|1|A|U|2564
*
5MMI|1|A|A|2578
5MMI|1|A|U|2579
5MMI|1|A|U|2580
5MMI|1|A|A|2581
5MMI|1|A|A|2582
5MMI|1|A|A|2583
5MMI|1|A|G|2584
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- plastid ribosomal protein uL3c
- Chain L
- 50S ribosomal protein L14, chloroplastic
Coloring options: