J3_5MMI_018
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAG*CGAUAGCGAAGUAGUAC*GGAAGG
- Length
- 27 nucleotides
- Bulged bases
- 5MMI|1|A|A|33, 5MMI|1|A|U|460, 5MMI|1|A|U|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MMI_018 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2807
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5MMI|1|A|C|31
5MMI|1|A|U|32
5MMI|1|A|A|33
5MMI|1|A|G|34
*
5MMI|1|A|C|457
5MMI|1|A|G|458
5MMI|1|A|A|459
5MMI|1|A|U|460
5MMI|1|A|A|461
5MMI|1|A|G|462
5MMI|1|A|C|463
5MMI|1|A|G|464
5MMI|1|A|A|465
5MMI|1|A|A|466
5MMI|1|A|G|467
5MMI|1|A|U|468
5MMI|1|A|A|469
5MMI|1|A|G|470
5MMI|1|A|U|471
5MMI|1|A|A|472
5MMI|1|A|C|473
*
5MMI|1|A|G|480
5MMI|1|A|G|481
5MMI|1|A|A|482
5MMI|1|A|A|483
5MMI|1|A|G|484
5MMI|1|A|G|485
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L34, chloroplastic
- Chain E
- plastid ribosomal protein uL4c
- Chain R
- 50S ribosomal protein L20, chloroplastic
- Chain V
- plastid ribosomal protein uL24c
Coloring options: