J3_5MMI_019

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAU*AACCCUAGAU*AGUAG

Length

20 nucleotides

Bulged bases

5MMI|1|A|U|330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MMI_019 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0869

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5MMI|1|A|C|307
5MMI|1|A|G|308
5MMI|1|A|A|309
5MMI|1|A|A|310
5MMI|1|A|U|311
*
5MMI|1|A|A|325
5MMI|1|A|A|326
5MMI|1|A|C|327
5MMI|1|A|C|328
5MMI|1|A|C|329
5MMI|1|A|U|330
5MMI|1|A|A|331
5MMI|1|A|G|332
5MMI|1|A|A|333
5MMI|1|A|U|334
*
5MMI|1|A|A|346
5MMI|1|A|G|347
5MMI|1|A|U|348
5MMI|1|A|A|349
5MMI|1|A|G|350

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

plastid ribosomal protein uL4c

Chain V

plastid ribosomal protein uL24c