J3_5MMI_021

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MMI_021 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0863

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5MMI|1|A|G|1445
5MMI|1|A|G|1446
5MMI|1|A|G|1447
5MMI|1|A|A|1448
5MMI|1|A|C|1449
5MMI|1|A|G|1450
*
5MMI|1|A|C|1598
5MMI|1|A|C|1599
*
5MMI|1|A|G|1602
5MMI|1|A|A|1603
5MMI|1|A|A|1604
5MMI|1|A|A|1605
5MMI|1|A|A|1606
5MMI|1|A|G|1607
5MMI|1|A|C|1608

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

plastid ribosomal protein cL37, PSRP5

Chain C

50S ribosomal protein L2, chloroplastic