J3_5MRE_011

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUA*UAA*UAUAAC

Length

12 nucleotides

Bulged bases

5MRE|1|A|U|2600, 5MRE|1|A|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRE_011 not in the Motif Atlas

Homologous match to J3_5J7L_045

Geometric discrepancy: 0.207

The information below is about J3_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5MRE|1|A|G|2445
5MRE|1|A|U|2446
5MRE|1|A|A|2447
*
5MRE|1|A|U|2587
5MRE|1|A|A|2588
5MRE|1|A|A|2589
*
5MRE|1|A|U|2598
5MRE|1|A|A|2599
5MRE|1|A|U|2600
5MRE|1|A|A|2601
5MRE|1|A|A|2602
5MRE|1|A|C|2603

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain E

uL5m

Chain K

uL16m

Chain R

bL27m