J3_5MRE_021

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGGA*UAU*AGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRE_021 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1223

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5MRE|1|aa|U|1008
5MRE|1|aa|G|1009
5MRE|1|aa|G|1010
5MRE|1|aa|A|1011
*
5MRE|1|aa|U|1267
5MRE|1|aa|A|1268
5MRE|1|aa|U|1269
*
5MRE|1|aa|A|1405
5MRE|1|aa|G|1406
5MRE|1|aa|A|1407
5MRE|1|aa|A|1408

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain II

uS9m

Chain MM

uS13m

Chain bb

Transfer RNA; tRNA