J3_5MRF_006
3D structure
- PDB id
- 5MRF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.97 Å
Loop
- Sequence
- UAAG*UGUAGAC*GUA
- Length
- 14 nucleotides
- Bulged bases
- 5MRF|1|A|U|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MRF_006 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.2368
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5MRF|1|A|U|1337
5MRF|1|A|A|1338
5MRF|1|A|A|1339
5MRF|1|A|G|1340
*
5MRF|1|A|U|1557
5MRF|1|A|G|1558
5MRF|1|A|U|1559
5MRF|1|A|A|1560
5MRF|1|A|G|1561
5MRF|1|A|A|1562
5MRF|1|A|C|1563
*
5MRF|1|A|G|1572
5MRF|1|A|U|1573
5MRF|1|A|A|1574
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 3
- mL41
- Chain Y
- bL34m
- Chain d
- mL67
Coloring options: