J3_5MRF_020

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

CAA*UAAA*UGAAAG

Length

13 nucleotides

Bulged bases

5MRF|1|aa|A|938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRF_020 not in the Motif Atlas

Geometric match to J3_7A0S_007

Geometric discrepancy: 0.2778

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5MRF|1|aa|C|891
5MRF|1|aa|A|892
5MRF|1|aa|A|893
*
5MRF|1|aa|U|924
5MRF|1|aa|A|925
5MRF|1|aa|A|926
5MRF|1|aa|A|927
*
5MRF|1|aa|U|934
5MRF|1|aa|G|935
5MRF|1|aa|A|936
5MRF|1|aa|A|937
5MRF|1|aa|A|938
5MRF|1|aa|G|939

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain BB

uS2m

Chain EE

uS5m

Chain HH

uS8m

Chain UU

mS23

Chain ZZ

mS37