3D structure

PDB id
5MY1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli expressome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.6 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5MY1_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1016
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

5MY1|1|A|C|936
5MY1|1|A|A|937
5MY1|1|A|A|938
5MY1|1|A|G|939
*
5MY1|1|A|C|1344
5MY1|1|A|U|1345
5MY1|1|A|A|1346
5MY1|1|A|G|1347
5MY1|1|A|U|1348
5MY1|1|A|A|1349
5MY1|1|A|A|1350
*
5MY1|1|A|U|1372
5MY1|1|A|G|1373
5MY1|1|A|A|1374
5MY1|1|A|A|1375
5MY1|1|A|U|1376
5MY1|1|A|A|1377
5MY1|1|A|C|1378
5MY1|1|A|G|1379

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9

Coloring options:


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