J3_5NCO_007

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5NCO|1|A|C|1607, 5NCO|1|A|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NCO_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.3389

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5NCO|1|A|C|1306
5NCO|1|A|A|1307
5NCO|1|A|A|1308
5NCO|1|A|G|1309
*
5NCO|1|A|C|1605
5NCO|1|A|C|1606
5NCO|1|A|C|1607
5NCO|1|A|A|1608
5NCO|1|A|A|1609
5NCO|1|A|A|1610
5NCO|1|A|C|1611
*
5NCO|1|A|G|1620
5NCO|1|A|U|1621
5NCO|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34