J3_5ND8_025
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 5ND8|1|a|U|1251, 5ND8|1|a|U|1313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND8_025 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1608
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
5ND8|1|a|C|1248
5ND8|1|a|A|1249
5ND8|1|a|A|1250
5ND8|1|a|U|1251
5ND8|1|a|G|1252
*
5ND8|1|a|C|1307
5ND8|1|a|U|1308
5ND8|1|a|C|1309
5ND8|1|a|A|1310
5ND8|1|a|G|1311
5ND8|1|a|U|1312
5ND8|1|a|U|1313
5ND8|1|a|C|1314
*
5ND8|1|a|G|1345
5ND8|1|a|C|1346
5ND8|1|a|U|1347
5ND8|1|a|G|1348
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
Coloring options: