J3_5ND8_027
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5ND8|1|A|U|494, 5ND8|1|A|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND8_027 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1819
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5ND8|1|A|C|32
5ND8|1|A|U|33
5ND8|1|A|U|34
5ND8|1|A|G|35
*
5ND8|1|A|C|491
5ND8|1|A|G|492
5ND8|1|A|A|493
5ND8|1|A|U|494
5ND8|1|A|A|495
5ND8|1|A|G|496
5ND8|1|A|U|497
5ND8|1|A|G|498
5ND8|1|A|A|499
5ND8|1|A|A|500
5ND8|1|A|C|501
5ND8|1|A|C|502
5ND8|1|A|A|503
5ND8|1|A|G|504
5ND8|1|A|U|505
5ND8|1|A|A|506
5ND8|1|A|C|507
*
5ND8|1|A|G|514
5ND8|1|A|G|515
5ND8|1|A|A|516
5ND8|1|A|A|517
5ND8|1|A|A|518
5ND8|1|A|G|519
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain F
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L23
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