J3_5ND9_013
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CC*GUUAAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5ND9|1|A|U|2853, 5ND9|1|A|A|2855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND9_013 not in the Motif Atlas
- Homologous match to J3_7A0S_013
- Geometric discrepancy: 0.194
- The information below is about J3_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5ND9|1|A|C|2834
5ND9|1|A|C|2835
*
5ND9|1|A|G|2851
5ND9|1|A|U|2852
5ND9|1|A|U|2853
5ND9|1|A|A|2854
5ND9|1|A|A|2855
5ND9|1|A|U|2856
*
5ND9|1|A|A|2902
5ND9|1|A|A|2903
5ND9|1|A|U|2904
5ND9|1|A|C|2905
5ND9|1|A|G|2906
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
- Chain Q
- 50S ribosomal protein L17
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