J3_5NDG_012
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 5NDG|1|1|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDG_012 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.075
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NDG|1|1|C|2664
5NDG|1|1|U|2665
5NDG|1|1|C|2666
*
5NDG|1|1|G|2690
5NDG|1|1|A|2691
5NDG|1|1|A|2692
*
5NDG|1|1|U|2701
5NDG|1|1|A|2702
5NDG|1|1|A|2703
5NDG|1|1|A|2704
5NDG|1|1|A|2705
5NDG|1|1|G|2706
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L5
- 60S ribosomal protein L5
- Chain M1
- 60S ribosomal protein L11-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain SM
- Suppressor protein STM1
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