J3_5NDJ_030
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5NDJ|1|1G|U|1494
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_030 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0954
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
5NDJ|1|1G|C|1455
5NDJ|1|1G|U|1456
5NDJ|1|1G|A|1457
5NDJ|1|1G|G|1458
*
5NDJ|1|1G|C|1480
5NDJ|1|1G|G|1481
5NDJ|1|1G|A|1482
5NDJ|1|1G|A|1483
5NDJ|1|1G|G|1484
*
5NDJ|1|1G|C|1491
5NDJ|1|1G|G|1492
5NDJ|1|1G|U|1493
5NDJ|1|1G|U|1494
5NDJ|1|1G|A|1495
5NDJ|1|1G|A|1496
5NDJ|1|1G|G|1497
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 12
- 30S ribosomal protein S2
- Chain 72
- 30S ribosomal protein S8
- Chain Y4
- mRNA
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