J3_5NDJ_039
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 5NDJ|1|1G|U|1867
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_039 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1273
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDJ|1|1G|C|1864
5NDJ|1|1G|A|1865
5NDJ|1|1G|A|1866
5NDJ|1|1G|U|1867
5NDJ|1|1G|G|1868
*
5NDJ|1|1G|C|1923
5NDJ|1|1G|C|1924
5NDJ|1|1G|C|1925
5NDJ|1|1G|A|1926
5NDJ|1|1G|G|1927
5NDJ|1|1G|U|1928
5NDJ|1|1G|U|1929
5NDJ|1|1G|C|1930
*
5NDJ|1|1G|G|1961
5NDJ|1|1G|C|1962
5NDJ|1|1G|C|1963
5NDJ|1|1G|G|1964
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1B
- 30S ribosomal protein Thx
- Chain 4A
- 30S ribosomal protein S13
- Chain 62
- 30S ribosomal protein S7
Coloring options: