J3_5NDK_003
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5NDK|1|13|U|1352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_003 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.105
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDK|1|13|U|1301
5NDK|1|13|G|1302
*
5NDK|1|13|C|1346
5NDK|1|13|G|1347
5NDK|1|13|C|1348
5NDK|1|13|C|1349
5NDK|1|13|G|1350
5NDK|1|13|A|1351
5NDK|1|13|U|1352
5NDK|1|13|G|1353
5NDK|1|13|G|1354
*
5NDK|1|13|C|1361
5NDK|1|13|A|1362
5NDK|1|13|G|1363
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 2I
- 30S ribosomal protein S11
- Chain 5E
- 30S ribosomal protein S6
- Chain 6I
- 30S ribosomal protein S15
- Chain 9I
- 30S ribosomal protein S18
- Chain Y1
- mRNA
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