J3_5NDK_010
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_010 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.1126
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDK|1|13|U|1701
5NDK|1|13|G|1702
*
5NDK|1|13|U|1711
5NDK|1|13|G|1712
5NDK|1|13|U|1713
5NDK|1|13|U|1714
5NDK|1|13|G|1715
*
5NDK|1|13|C|1726
5NDK|1|13|G|1727
5NDK|1|13|C|1728
5NDK|1|13|A|1729
5NDK|1|13|A|1730
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1E
- 30S ribosomal protein S2
- Chain 4E
- 30S ribosomal protein S5
- Chain Y1
- mRNA
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