J3_5NDK_022
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_022 not in the Motif Atlas
- Homologous match to J3_7RQB_010
- Geometric discrepancy: 0.0598
- The information below is about J3_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.3
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDK|1|14|U|2116
5NDK|1|14|U|2117
5NDK|1|14|G|2118
*
5NDK|1|14|C|2221
5NDK|1|14|U|2222
5NDK|1|14|A|2223
5NDK|1|14|A|2224
5NDK|1|14|C|2225
*
5NDK|1|14|G|2238
5NDK|1|14|G|2239
5NDK|1|14|A|2240
5NDK|1|14|C|2241
5NDK|1|14|A|2242
5NDK|1|14|G|2243
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 3E
- 30S ribosomal protein S4
- Chain 69
- 50S ribosomal protein L9
- Chain F5
- 50S ribosomal protein L28
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