J3_5NDK_033
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 5NDK|1|1G|A|1598, 5NDK|1|1G|G|1599, 5NDK|1|1G|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_033 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1229
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|1G|U|1578
5NDK|1|1G|U|1579
5NDK|1|1G|U|1580
5NDK|1|1G|A|1581
5NDK|1|1G|A|1582
5NDK|1|1G|U|1583
5NDK|1|1G|U|1584
5NDK|1|1G|C|1585
*
5NDK|1|1G|G|1596
5NDK|1|1G|A|1597
5NDK|1|1G|A|1598
5NDK|1|1G|G|1599
5NDK|1|1G|A|1600
5NDK|1|1G|A|1601
5NDK|1|1G|C|1602
5NDK|1|1G|C|1603
5NDK|1|1G|U|1604
5NDK|1|1G|U|1605
5NDK|1|1G|A|1606
5NDK|1|1G|C|1607
*
5NDK|1|1G|G|1848
5NDK|1|1G|G|1849
5NDK|1|1G|C|1850
5NDK|1|1G|G|1851
5NDK|1|1G|A|1852
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
- Chain W4
- Transfer RNA; tRNA
Coloring options: