J3_5NDK_041
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 5NDK|1|1H|A|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_041 not in the Motif Atlas
- Homologous match to J3_7RQB_002
- Geometric discrepancy: 0.0978
- The information below is about J3_7RQB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84625.2
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDK|1|1H|A|55
5NDK|1|1H|C|56
*
5NDK|1|1H|G|69
5NDK|1|1H|A|70
5NDK|1|1H|U|71
5NDK|1|1H|A|72
5NDK|1|1H|A|73
5NDK|1|1H|G|74
5NDK|1|1H|C|75
*
5NDK|1|1H|G|108
5NDK|1|1H|A|109
5NDK|1|1H|U|110
5NDK|1|1H|G|111
5NDK|1|1H|U|112
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain F8
- 50S ribosomal protein L23
- Chain K8
- 50S ribosomal protein L29
- Chain P8
- 50S ribosomal protein L34
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