J3_5NDK_063
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5NDK|1|1G|C|694, 5NDK|1|1G|A|696, 5NDK|1|1G|A|697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_063 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0686
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|1G|G|692
5NDK|1|1G|C|693
5NDK|1|1G|C|694
5NDK|1|1G|U|695
5NDK|1|1G|A|696
5NDK|1|1G|A|697
5NDK|1|1G|G|698
*
5NDK|1|1G|U|1000
5NDK|1|1G|A|1001
5NDK|1|1G|G|1002
5NDK|1|1G|G|1003
5NDK|1|1G|A|1004
5NDK|1|1G|A|1005
5NDK|1|1G|U|1006
5NDK|1|1G|C|1007
5NDK|1|1G|U|1008
*
5NDK|1|1G|A|1034
5NDK|1|1G|G|1035
5NDK|1|1G|C|1036
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 3A
- 30S ribosomal protein S12
- Chain 7A
- 30S ribosomal protein S16
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