J3_5NDK_064
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 5NDK|1|1G|A|1282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_064 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0826
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|1G|C|1215
5NDK|1|1G|G|1216
5NDK|1|1G|G|1217
*
5NDK|1|1G|C|1280
5NDK|1|1G|U|1281
5NDK|1|1G|A|1282
5NDK|1|1G|G|1283
5NDK|1|1G|A|1284
*
5NDK|1|1G|U|1380
5NDK|1|1G|G|1381
5NDK|1|1G|A|1382
5NDK|1|1G|C|1383
5NDK|1|1G|G|1384
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 3A
- 30S ribosomal protein S12
- Chain 6A
- 30S ribosomal protein S15
- Chain 72
- 30S ribosomal protein S8
- Chain 8A
- 30S ribosomal protein S17
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