J3_5NG8_003

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

5NG8|1|AA|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_003 not in the Motif Atlas

Geometric match to J3_4WF9_022

Geometric discrepancy: 0.1659

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5NG8|1|AA|C|272
5NG8|1|AA|A|273
5NG8|1|AA|A|274
5NG8|1|AA|A|275
5NG8|1|AA|C|276
*
5NG8|1|AA|G|295
5NG8|1|AA|G|296
5NG8|1|AA|G|297
5NG8|1|AA|U|298
5NG8|1|AA|U|299
5NG8|1|AA|G|300
5NG8|1|AA|U|301
5NG8|1|AA|A|302
*
5NG8|1|AA|U|415
5NG8|1|AA|G|416

Current chains

Chain AA

23S ribosomal RNA

Nearby chains