J3_5NG8_010
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5NG8|1|AA|A|2545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NG8_010 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.1165
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5NG8|1|AA|C|2544
5NG8|1|AA|A|2545
5NG8|1|AA|U|2546
5NG8|1|AA|C|2547
*
5NG8|1|AA|G|2572
5NG8|1|AA|U|2573
5NG8|1|AA|U|2574
*
5NG8|1|AA|A|2588
5NG8|1|AA|U|2589
5NG8|1|AA|U|2590
5NG8|1|AA|A|2591
5NG8|1|AA|A|2592
5NG8|1|AA|A|2593
5NG8|1|AA|G|2594
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AI
- 50S ribosomal protein L14
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