J3_5NG8_012

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CC*GUUAAU*AAUCG

Length

13 nucleotides

Bulged bases

5NG8|1|AA|U|2853, 5NG8|1|AA|A|2855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_012 not in the Motif Atlas

Geometric match to J3_4WF9_021

Geometric discrepancy: 0.1166

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5NG8|1|AA|C|2834
5NG8|1|AA|C|2835
*
5NG8|1|AA|G|2851
5NG8|1|AA|U|2852
5NG8|1|AA|U|2853
5NG8|1|AA|A|2854
5NG8|1|AA|A|2855
5NG8|1|AA|U|2856
*
5NG8|1|AA|A|2902
5NG8|1|AA|A|2903
5NG8|1|AA|U|2904
5NG8|1|AA|C|2905
5NG8|1|AA|G|2906

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AL

50S ribosomal protein L17

Chain AZ

50S ribosomal protein L32