J3_5NG8_040
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 5NG8|1|Ba|U|731
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NG8_040 not in the Motif Atlas
- Geometric match to J3_4LFB_012
- Geometric discrepancy: 0.1443
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NG8|1|Ba|U|680
5NG8|1|Ba|G|681
*
5NG8|1|Ba|C|725
5NG8|1|Ba|A|726
5NG8|1|Ba|C|727
5NG8|1|Ba|C|728
5NG8|1|Ba|A|729
5NG8|1|Ba|G|730
5NG8|1|Ba|U|731
5NG8|1|Ba|G|732
5NG8|1|Ba|G|733
*
5NG8|1|Ba|C|740
5NG8|1|Ba|G|741
5NG8|1|Ba|A|742
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bf
- 30S ribosomal protein S6
- Chain Bk
- 30S ribosomal protein S11
- Chain Bo
- 30S ribosomal protein S15
- Chain Br
- 30S ribosomal protein S18
- Chain Bu
- 30S ribosomal protein S21
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