J3_5NG8_054
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5NG8|1|Aa|C|49, 5NG8|1|Aa|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NG8_054 not in the Motif Atlas
- Geometric match to J3_5J7L_050
- Geometric discrepancy: 0.0892
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NG8|1|Aa|G|47
5NG8|1|Aa|C|48
5NG8|1|Aa|C|49
5NG8|1|Aa|U|50
5NG8|1|Aa|A|51
5NG8|1|Aa|A|52
5NG8|1|Aa|U|53
*
5NG8|1|Aa|A|367
5NG8|1|Aa|G|368
5NG8|1|Aa|G|369
5NG8|1|Aa|G|370
5NG8|1|Aa|A|371
5NG8|1|Aa|A|372
5NG8|1|Aa|U|373
5NG8|1|Aa|C|374
5NG8|1|Aa|U|375
*
5NG8|1|Aa|A|401
5NG8|1|Aa|G|402
5NG8|1|Aa|C|403
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Al
- 30S ribosomal protein S12
- Chain Ap
- 30S ribosomal protein S16
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