J3_5NG8_064

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_064 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.0728

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5NG8|1|BA|G|1468
5NG8|1|BA|G|1469
5NG8|1|BA|G|1470
5NG8|1|BA|A|1471
5NG8|1|BA|C|1472
5NG8|1|BA|G|1473
*
5NG8|1|BA|C|1611
5NG8|1|BA|C|1612
*
5NG8|1|BA|G|1615
5NG8|1|BA|A|1616
5NG8|1|BA|A|1617
5NG8|1|BA|A|1618
5NG8|1|BA|A|1619
5NG8|1|BA|G|1620
5NG8|1|BA|C|1621

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2