J3_5NG8_066

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

5NG8|1|Ba|C|49, 5NG8|1|Ba|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_066 not in the Motif Atlas

Geometric match to J3_5J7L_050

Geometric discrepancy: 0.0892

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5NG8|1|Ba|G|47
5NG8|1|Ba|C|48
5NG8|1|Ba|C|49
5NG8|1|Ba|U|50
5NG8|1|Ba|A|51
5NG8|1|Ba|A|52
5NG8|1|Ba|U|53
*
5NG8|1|Ba|A|367
5NG8|1|Ba|G|368
5NG8|1|Ba|G|369
5NG8|1|Ba|G|370
5NG8|1|Ba|A|371
5NG8|1|Ba|A|372
5NG8|1|Ba|U|373
5NG8|1|Ba|C|374
5NG8|1|Ba|U|375
*
5NG8|1|Ba|A|401
5NG8|1|Ba|G|402
5NG8|1|Ba|C|403

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bl

30S ribosomal protein S12

Chain Bp

30S ribosomal protein S16