J3_5NGM_004

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5NGM|1|AA|U|731, 5NGM|1|AA|G|837, 5NGM|1|AA|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_004 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.0992

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

5NGM|1|AA|U|728
5NGM|1|AA|G|729
5NGM|1|AA|A|730
5NGM|1|AA|U|731
5NGM|1|AA|C|732
5NGM|1|AA|U|733
5NGM|1|AA|A|734
*
5NGM|1|AA|U|818
5NGM|1|AA|A|819
5NGM|1|AA|G|820
*
5NGM|1|AA|C|836
5NGM|1|AA|G|837
5NGM|1|AA|A|838
5NGM|1|AA|A|839

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AC

50S ribosomal protein L2