J3_5NGM_004
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 5NGM|1|AA|U|731, 5NGM|1|AA|G|837, 5NGM|1|AA|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NGM_004 not in the Motif Atlas
- Homologous match to J3_4WF9_002
- Geometric discrepancy: 0.0992
- The information below is about J3_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NGM|1|AA|U|728
5NGM|1|AA|G|729
5NGM|1|AA|A|730
5NGM|1|AA|U|731
5NGM|1|AA|C|732
5NGM|1|AA|U|733
5NGM|1|AA|A|734
*
5NGM|1|AA|U|818
5NGM|1|AA|A|819
5NGM|1|AA|G|820
*
5NGM|1|AA|C|836
5NGM|1|AA|G|837
5NGM|1|AA|A|838
5NGM|1|AA|A|839
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L34
- Chain AC
- 50S ribosomal protein L2
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