3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGAUCUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
5NGM|1|AA|U|731, 5NGM|1|AA|G|837, 5NGM|1|AA|A|838
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5NGM_004 not in the Motif Atlas
Homologous match to J3_4WF9_002
Geometric discrepancy: 0.0992
The information below is about J3_4WF9_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

5NGM|1|AA|U|728
5NGM|1|AA|G|729
5NGM|1|AA|A|730
5NGM|1|AA|U|731
5NGM|1|AA|C|732
5NGM|1|AA|U|733
5NGM|1|AA|A|734
*
5NGM|1|AA|U|818
5NGM|1|AA|A|819
5NGM|1|AA|G|820
*
5NGM|1|AA|C|836
5NGM|1|AA|G|837
5NGM|1|AA|A|838
5NGM|1|AA|A|839

Current chains

Chain AA
23S Ribosomal RNA

Nearby chains

Chain A2
50S ribosomal protein L34
Chain AC
50S ribosomal protein L2

Coloring options:


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