J3_5NGM_005

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.078

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5NGM|1|AA|C|743
5NGM|1|AA|A|744
5NGM|1|AA|G|745
*
5NGM|1|AA|C|777
5NGM|1|AA|G|778
5NGM|1|AA|A|779
5NGM|1|AA|A|780
5NGM|1|AA|C|781
*
5NGM|1|AA|G|805
5NGM|1|AA|A|806
5NGM|1|AA|U|807
5NGM|1|AA|G|808

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2