J3_5NGM_007

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

5NGM|1|AA|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1465

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

5NGM|1|AA|C|1342
5NGM|1|AA|U|1343
5NGM|1|AA|A|1344
5NGM|1|AA|A|1345
5NGM|1|AA|G|1346
*
5NGM|1|AA|C|1649
5NGM|1|AA|G|1650
5NGM|1|AA|C|1651
5NGM|1|AA|A|1652
5NGM|1|AA|A|1653
5NGM|1|AA|A|1654
5NGM|1|AA|C|1655
*
5NGM|1|AA|G|1664
5NGM|1|AA|U|1665
5NGM|1|AA|A|1666
5NGM|1|AA|G|1667

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34