J3_5NGM_009
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NGM_009 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.189
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NGM|1|AA|C|2322
5NGM|1|AA|U|2323
5NGM|1|AA|C|2324
*
5NGM|1|AA|G|2348
5NGM|1|AA|A|2349
5NGM|1|AA|G|2350
*
5NGM|1|AA|C|2359
5NGM|1|AA|A|2360
5NGM|1|AA|U|2361
5NGM|1|AA|A|2362
5NGM|1|AA|A|2363
5NGM|1|AA|G|2364
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 50S ribosomal protein L5
- Chain AM
- 50S ribosomal protein L18
- Chain AU
- 50S ribosomal protein L27
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