J3_5NGM_010

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5NGM|1|AA|A|2545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_010 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.086

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5NGM|1|AA|C|2544
5NGM|1|AA|A|2545
5NGM|1|AA|U|2546
5NGM|1|AA|C|2547
*
5NGM|1|AA|G|2572
5NGM|1|AA|U|2573
5NGM|1|AA|U|2574
*
5NGM|1|AA|A|2588
5NGM|1|AA|U|2589
5NGM|1|AA|U|2590
5NGM|1|AA|A|2591
5NGM|1|AA|A|2592
5NGM|1|AA|A|2593
5NGM|1|AA|G|2594

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L14