J3_5NGM_011

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_011 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.2416

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5NGM|1|AA|C|2816
5NGM|1|AA|A|2817
*
5NGM|1|AA|U|2826
5NGM|1|AA|A|2827
5NGM|1|AA|U|2828
5NGM|1|AA|A|2829
5NGM|1|AA|A|2830
5NGM|1|AA|G|2831
*
5NGM|1|AA|C|2909
5NGM|1|AA|G|2910
5NGM|1|AA|A|2911
5NGM|1|AA|A|2912
5NGM|1|AA|G|2913

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3