J3_5NGM_021

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

5NGM|1|Aa|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_021 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2057

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5NGM|1|Aa|C|999
5NGM|1|Aa|U|1000
5NGM|1|Aa|U|1001
5NGM|1|Aa|G|1002
*
5NGM|1|Aa|C|1056
5NGM|1|Aa|A|1057
5NGM|1|Aa|G|1058
*
5NGM|1|Aa|C|1220
5NGM|1|Aa|U|1221
5NGM|1|Aa|U|1222
5NGM|1|Aa|A|1223
5NGM|1|Aa|U|1224
5NGM|1|Aa|G|1225

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain An

30S ribosomal protein S14 type Z