3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUUG*CAG*CUUAUG
Length
13 nucleotides
Bulged bases
5NGM|1|Aa|U|1224
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5NGM_021 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.2057
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

5NGM|1|Aa|C|999
5NGM|1|Aa|U|1000
5NGM|1|Aa|U|1001
5NGM|1|Aa|G|1002
*
5NGM|1|Aa|C|1056
5NGM|1|Aa|A|1057
5NGM|1|Aa|G|1058
*
5NGM|1|Aa|C|1220
5NGM|1|Aa|U|1221
5NGM|1|Aa|U|1222
5NGM|1|Aa|A|1223
5NGM|1|Aa|U|1224
5NGM|1|Aa|G|1225

Current chains

Chain Aa
16S ribosomal RNA

Nearby chains

Chain An
30S ribosomal protein S14 type Z

Coloring options:


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