J3_5NGM_027

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGGUCC*GGAUAA*UA

Length

16 nucleotides

Bulged bases

5NGM|1|AA|C|1387, 5NGM|1|AA|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_027 not in the Motif Atlas

Homologous match to J3_4WF9_016

Geometric discrepancy: 0.5939

The information below is about J3_4WF9_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

5NGM|1|AA|U|1381
5NGM|1|AA|C|1382
5NGM|1|AA|G|1383
5NGM|1|AA|G|1384
5NGM|1|AA|G|1385
5NGM|1|AA|U|1386
5NGM|1|AA|C|1387
5NGM|1|AA|C|1388
*
5NGM|1|AA|G|1417
5NGM|1|AA|G|1418
5NGM|1|AA|A|1419
5NGM|1|AA|U|1420
5NGM|1|AA|A|1421
5NGM|1|AA|A|1422
*
5NGM|1|AA|U|1439
5NGM|1|AA|A|1440

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L23