J3_5NGM_035

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_035 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1775

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5NGM|1|Aa|U|1084
5NGM|1|Aa|G|1085
*
5NGM|1|Aa|U|1094
5NGM|1|Aa|G|1095
5NGM|1|Aa|U|1096
5NGM|1|Aa|U|1097
*
5NGM|1|Aa|G|1110
5NGM|1|Aa|C|1111
5NGM|1|Aa|A|1112
5NGM|1|Aa|A|1113

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ae

30S ribosomal protein S5