J3_5NJT_003
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 5NJT|1|A|U|732
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_003 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1797
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|A|U|681
5NJT|1|A|G|682
*
5NJT|1|A|C|726
5NJT|1|A|A|727
5NJT|1|A|C|728
5NJT|1|A|C|729
5NJT|1|A|A|730
5NJT|1|A|G|731
5NJT|1|A|U|732
5NJT|1|A|G|733
5NJT|1|A|G|734
*
5NJT|1|A|C|741
5NJT|1|A|G|742
5NJT|1|A|A|743
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain R
- 30S ribosomal protein S18
- Chain W
- 50S ribosomal protein L2
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